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009 Re:Cyborg follows a group of nine cyborgs, each of them created by a shadowy organization for use as weapons against humanity. The group turns on their creators to protect the population instead, using the powers given them to fight their creators.

The story takes place in the year 2034, two years after the events in Ghost in the Shell: S.A.C. 2nd GIG. Female cyborg Major Motoko Kusanagi has left Public Security Section 9, an elite counter-terrorist and anti-crime unit specializing in cyber-warfare, which has expanded to a team of 20 field operatives with Togusa acting as the field lead.

Cyborg detective Batou is assigned to investigate a series of murders committed by gynoids—doll-like cyborgs, which all malfunctioned, killed, then self-destructed afterwards. The brains of the gynoids initialize in order to protect their manufacturer's software, but in one gynoid, which Batou himself neutralized, one file remains: a voice speaking the phrase "Help me."

The Third World War (2099–2126) devastated part of the Earth. Former nations are reforming while new powers emerge, and groups of humans struggle to survive in ruined cities. The story follows Deunan Knute and her partner Briareos as they search for the legendary city of Olympus.

In the futuristic city of Olympus, built on the ashes of the third world war, a police officer and her cyborg partner fight terrorism.

In a utopian society created at the end of World War III, a female warrior who has been plucked from the badlands begins to see cracks in this new facade. And what does this community have planned for the rest of humankind?

In the year 2029, Section 9, a group of cybernetically enhanced cops, are called in to investigate and stop a highly-wanted hacker known as 'The Puppetmaster'.

The upcoming installment's story takes place amidst signs of postwar reconstruction in the winter of 2028. Tensions are rising in New Port City as demonstrations are held concerning the interests of foreign cartels. This leads to a shooting incident involving riot police. It all started with a cyberbrain infection released by the terrorist "Fire Starter." An independent offensive unit led by Makoto Kusanagi entrusts the suppression of the situation to their ghosts and aims for their own justice. Below the surface of the incident, lies the "tin girl" Emma and the "scarecrow man" Burinda Junior. As Kusanagi deals with the incident, she draws near to what those two ghosts were seeking.

Second film of the Mardock Scramble series. Balot and a severely injured Oeufcoque seem to be at the mercy of an obsessed Boiled. Dr. Easter comes to the rescue and the group escapes to "Paradise" where many secrets of Mardock lie and where Balot will need to come to a decision herself about what she will and can do.

In a futuristic Japan, the Sibyl System is charged with keeping the peace. When the state of SEAUn brings the Sibyl System in to test its effectiveness, it becomes a haven of peace and safety—for a time. Eventually, terrorists from SEAUn begin appearing in Japan, somehow slipping through the System's security and attacking from within. Desperate for answers, Inspector Akane Tsunemori is sent overseas to bring the terrorists to justice. But when her investigation forces her into a standoff with an old ally, will she be able to pull the trigger?

Rune Ballot is a down-and-out teen prostitute in Mardock City. One day, she's picked up by an ambitious casino manager named Shell who gives her everything she could want. Renewed by a false innocence, a false past, and now the false life Shell has given her, Ballot feels grateful. However, she can't help but be curious about why he's done so much for her, so she does some research about his past on a computer. This turns out to be a mistake which will change her life greatly. When Shell finds out what she's done, he attempts to burn her to death by blowing up her car.

In the year 2029, the barriers of our world have been broken down by the net and by cybernetics, but this brings new vulnerability to humans in the form of brain-hacking. When a highly-wanted hacker known as 'The Puppetmaster' begins involving them in politics, Section 9, a group of cybernetically enhanced cops, are called in to investigate and stop the Puppetmaster.

Freed of her responsibilities with the 501 Organization, Motoko Kusanagi must now learn how to take orders from Aramaki. Someone hacks the Logicomas, and Batou enlists the help of former army intelligence officer Ishikawa and former air artillery expert Borma. Kusanagi also seeks to enlist ace sniper Saito and undercover cop Paz into the new Public Security Section 9.

Cooler has resurrected himself as a robot and is enslaving the people of New Namek. Goku and the gang must help.

In his travels as a bounty hunter, Hunter–Warrior and cyborg healer Ido one day discovers and repairs the remnants of a cyborg whom he names Gally. Though possessing the body of a young woman, Gally now embodies Ido's most sophisticated and lethal cybernetic skills. The preternaturally strong, amnesiac Gally begins to forge a life for herself in a world where every day is a struggle for survival.

In the year 2045, after an economic disaster known as the Synchronized Global Default, rapid developments in AI propelled the world to enter a state of "Sustainable War". However, the public is not aware of the threat that AI has towards the human race. A compilation film with newly added footage.

Posing as lovers on vacation, Motoko and Batou work to try to stop a terrorist organization whose symbol is the Scrasath. Meanwhile, Togusa investigates a murder of a man who possessed a prosthetic leg manufactured by the Mermaid's Leg corporation.

The year is 2030, and an influx of refuges have effortlessly transformed themselves into a terrorist organization known as the "Individual Eleven." With a sadistic intent of mass destruction, will they triumph in victory or discover the gloomy pitfalls of defeat?

The year is 2030 and six years have passed since a criminal known only as "The Laughing Man" swept through top medical nanotechnology firms committing acts of cyber-terrorism, kidnapping, and espionage leaving no known suspects. New information is revealed, as Section 9 enters the hunt for a suspect capable of unfathomable actions in this compilation of Stand Alone Complex content.

Twelve years after Char's rebellion, Hathaway Noa leads an insurgency against Earth Federation, but meeting an enemy officer and a mysterious woman alters his fate.