Hana begins sixth grade, but cannot read or write.

Hadzuki feels that she and Yada are becoming distant as he becomes closer to Shiori.

As the class settles in Kyoto, Kotake tries to protect Doremi from Akatsuki. Hana is turned back into a baby and the girls must hide her for the night.

Mutsumi wants to retire pro-wrestling after seeing her wrestling idol, Candy, retire.

The 6th grade goes on a camping trip. During a scavenger hunt, Doremi and Kotake get lost.

Tamaki falls under the virus of the Witch Queen. Hana decides to cure her for her Level 1 exam.

As Onpu is accepted into a different middle school, Momoko is given the choice to move back to New York or stay in Japan.

Aiko goes to Osaka to help take care of her grandfather at the hospital. Her parents make the decision to take care of him at home, and as a result, decide to move back to Osaka.

Hazuki secretly wants to apply to her dream school, but becomes conflicted over choosing her desires over staying with Doremi.

On the day of graduation, Doremi refuses to attend school in fear of losing her friends forever. So she locks her self up in the Maho-Dou. Hana threatens to use magic, and Doremi comes out just in time before she shows everyone. In the end, after graduation, the girls send off Hana-chan, Majo Rika and the fairies with Hana promising to become the Queen fast so the can see each other again. Hana turns back into a baby when she enters the witch world. Doremi calls out to her and Hana-Chan turns around and says, "Thank you." While the theme for the original Ojamajo Doremi is played they show Momo-Chan and her parents in the airport while she says "See you. You are my best friend. I love you.(In english)" Onpu is shown with her parents in front of their car. Aiko is shown with her parents getting on the train. Hazuki is shown with Pop and (Doremi's) parents is Doremi's house. In the witch world Hana and the other babies are shown laying on Pao.